PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_07973
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 347aa    MW: 39019.1 Da    PI: 10.0634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_07973genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20112162256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +++GVr ++ +g+W+AeIrdp+   +rkr++lg+f +aeeAa a++ a+ +l+ge
  PEQU_07973 112 RFRGVRHRP-WGKWAAEIRDPN---QRKRVWLGTFNSAEEAATAYDSAAVRLHGE 162
                 79****888.**********93...36**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.06E-30111171No hitNo description
SMARTSM003804.5E-38112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-31112170IPR001471AP2/ERF domain
PROSITE profilePS5103224.065112169IPR001471AP2/ERF domain
PfamPF008471.2E-12112162IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23112171IPR016177DNA-binding domain
PRINTSPR003676.1E-10113124IPR001471AP2/ERF domain
PRINTSPR003676.1E-10135151IPR001471AP2/ERF domain
CDDcd000860.00905266327No hitNo description
SuperFamilySSF466892.41E-7266328IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-12275328IPR009057Homeodomain-like
PfamPF059201.7E-6285322IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSRLDVHES NSPEHTGELI LARPEEEAED DARRKSEKAS DVLPTGKLRS IRILFTDADA  60
TDSSSSDRED VDHIRRHVRE IEFKSATVNG RIPAKEPPKA SWVLPKDCAL KRFRGVRHRP  120
WGKWAAEIRD PNQRKRVWLG TFNSAEEAAT AYDSAAVRLH GEKAVTNFPH QNHSVLPVSP  180
AKESAVGVDS AGEDPVATAA ICEDKRPPSG VLKKPDCLRF CCLVPTDSER TAVERARLEL  240
KQEPKQKLKK GCKENIVGIR EQFLLKKRTV RVTGDTASIL KARWQSHSKS PFRTEEDKAQ  300
LIKESGLHLK EINNWIMTQR NRNWRSHSSS TVLKSKCNCN AGNAARF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19111174468ATERF1
3gcc_A2e-19111174468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656543.18e-42PREDICTED: homeobox protein knotted-1-like 13 isoform X2
SwissprotP480002e-41KNAT3_ARATH; Homeobox protein knotted-1-like 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.18e-35KNOTTED1-like homeobox gene 3